Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,760,717 bacterial strains
senterica Image

Salmonella

Total strains: 776,966

Assemblies in progress: 291

Schemes: rMLST, Achtman 7 Gene MLST, cgMLST V2 + HierCC V1, wgMLST
ecoli Image

Escherichia/Shigella

Total strains: 453,741

Assemblies in progress: 262

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
mycobacterium Image

Mycobacterium tuberculosis

Total strains: 210,749

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
streptococcus Image

Streptococcus

Total strains: 173,970

Assemblies in progress: 15

Schemes: cgMLSTv1
enterococcus Image

Enterococcus

Total strains: 54,652

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 35,790

Assemblies in progress: 722

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
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Vibrio

Total strains: 26,316

Assemblies in progress: 34

Schemes: rMLST, Vibrio cgMLST + HierCC
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Yersinia

Total strains: 12,995

Assemblies in progress: 3

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
helicobacter Image

Helicobacter

Total strains: 12,544

Assemblies in progress: 23

Schemes: rMLST
mcatarrhalis Image

Moraxella

Total strains: 2,994

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene