Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,774,272 bacterial strains
senterica Image

Salmonella

Total strains: 782,454

Assemblies in progress: 159

Schemes: rMLST, Achtman 7 Gene MLST, cgMLST V2 + HierCC V1, wgMLST
ecoli Image

Escherichia/Shigella

Total strains: 457,294

Assemblies in progress: 142

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
mycobacterium Image

Mycobacterium tuberculosis

Total strains: 210,764

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
streptococcus Image

Streptococcus

Total strains: 174,334

Assemblies in progress: 15

Schemes: cgMLSTv1
enterococcus Image

Enterococcus

Total strains: 54,652

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 39,605

Assemblies in progress: 351

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 26,499

Assemblies in progress: 32

Schemes: rMLST, Vibrio cgMLST + HierCC
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Yersinia

Total strains: 13,111

Assemblies in progress: 2

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
helicobacter Image

Helicobacter

Total strains: 12,565

Assemblies in progress: 0

Schemes: rMLST
mcatarrhalis Image

Moraxella

Total strains: 2,994

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene