Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,846,589 bacterial strains
senterica Image

Salmonella

Total strains: 809,895

Assemblies in progress: 2,865

Schemes: rMLST, Achtman 7 Gene MLST, wgMLST, cgMLST V2 + HierCC V1
ecoli Image

Escherichia/Shigella

Total strains: 473,779

Assemblies in progress: 2,330

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
mycobacterium Image

Mycobacterium tuberculosis

Total strains: 221,317

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
streptococcus Image

Streptococcus

Total strains: 183,116

Assemblies in progress: 255

Schemes: cgMLSTv1
enterococcus Image

Enterococcus

Total strains: 61,802

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 40,358

Assemblies in progress: 4

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 27,251

Assemblies in progress: 95

Schemes: rMLST, Vibrio cgMLST + HierCC
yersinia Image

Yersinia

Total strains: 13,504

Assemblies in progress: 11

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
helicobacter Image

Helicobacter

Total strains: 12,571

Assemblies in progress: 86

Schemes: rMLST
mcatarrhalis Image

Moraxella

Total strains: 2,996

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene