Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,889,204 bacterial strains
senterica Image

Salmonella

Total strains: 821,700

Assemblies in progress: 117

Schemes: rMLST, Achtman 7 Gene MLST, wgMLST, cgMLST V2 + HierCC V1
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Escherichia/Shigella

Total strains: 480,658

Assemblies in progress: 64

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
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Mycobacterium tuberculosis

Total strains: 233,611

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
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Streptococcus

Total strains: 187,019

Assemblies in progress: 19

Schemes: cgMLSTv1
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Enterococcus

Total strains: 62,099

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 40,453

Assemblies in progress: 0

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
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Vibrio

Total strains: 27,911

Assemblies in progress: 0

Schemes: rMLST, Vibrio cgMLST + HierCC
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Helicobacter

Total strains: 18,995

Assemblies in progress: 0

Schemes: rMLST
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Yersinia

Total strains: 13,762

Assemblies in progress: 1

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
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Moraxella

Total strains: 2,996

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene