Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,865,335 bacterial strains
senterica Image

Salmonella

Total strains: 815,529

Assemblies in progress: 134

Schemes: rMLST, Achtman 7 Gene MLST, wgMLST, cgMLST V2 + HierCC V1
ecoli Image

Escherichia/Shigella

Total strains: 478,148

Assemblies in progress: 53

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
mycobacterium Image

Mycobacterium tuberculosis

Total strains: 222,615

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
streptococcus Image

Streptococcus

Total strains: 183,780

Assemblies in progress: 1,161

Schemes: cgMLSTv1
enterococcus Image

Enterococcus

Total strains: 61,780

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 40,398

Assemblies in progress: 0

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 27,702

Assemblies in progress: 2

Schemes: rMLST, Vibrio cgMLST + HierCC
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Helicobacter

Total strains: 18,652

Assemblies in progress: 271

Schemes: rMLST
yersinia Image

Yersinia

Total strains: 13,735

Assemblies in progress: 2

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
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Moraxella

Total strains: 2,996

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene