Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,874,014 bacterial strains
senterica Image

Salmonella

Total strains: 817,988

Assemblies in progress: 213

Schemes: rMLST, Achtman 7 Gene MLST, wgMLST, cgMLST V2 + HierCC V1
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Escherichia/Shigella

Total strains: 479,274

Assemblies in progress: 24

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
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Mycobacterium tuberculosis

Total strains: 224,864

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
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Streptococcus

Total strains: 186,201

Assemblies in progress: 19

Schemes: cgMLSTv1
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Enterococcus

Total strains: 61,801

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
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Clostridioides

Total strains: 40,408

Assemblies in progress: 0

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 27,818

Assemblies in progress: 0

Schemes: rMLST, Vibrio cgMLST + HierCC
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Helicobacter

Total strains: 18,922

Assemblies in progress: 0

Schemes: rMLST
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Yersinia

Total strains: 13,742

Assemblies in progress: 1

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
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Moraxella

Total strains: 2,996

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene