Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,869,001 bacterial strains
senterica Image

Salmonella

Total strains: 816,109

Assemblies in progress: 157

Schemes: rMLST, Achtman 7 Gene MLST, wgMLST, cgMLST V2 + HierCC V1
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Escherichia/Shigella

Total strains: 478,517

Assemblies in progress: 114

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
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Mycobacterium tuberculosis

Total strains: 222,797

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
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Streptococcus

Total strains: 186,101

Assemblies in progress: 19

Schemes: cgMLSTv1
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Enterococcus

Total strains: 61,780

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 40,398

Assemblies in progress: 0

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 27,712

Assemblies in progress: 0

Schemes: rMLST, Vibrio cgMLST + HierCC
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Helicobacter

Total strains: 18,851

Assemblies in progress: 71

Schemes: rMLST
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Yersinia

Total strains: 13,740

Assemblies in progress: 1

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
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Moraxella

Total strains: 2,996

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene