Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,863,227 bacterial strains
senterica Image

Salmonella

Total strains: 814,685

Assemblies in progress: 476

Schemes: rMLST, Achtman 7 Gene MLST, wgMLST, cgMLST V2 + HierCC V1
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Escherichia/Shigella

Total strains: 477,614

Assemblies in progress: 484

Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1
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Mycobacterium tuberculosis

Total strains: 222,342

Schemes: cgMLST + HierCC, cgMLST V2 + HierCC
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Streptococcus

Total strains: 183,674

Assemblies in progress: 18

Schemes: cgMLSTv1
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Enterococcus

Total strains: 61,780

Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC
clostridium Image

Clostridioides

Total strains: 40,391

Assemblies in progress: 0

Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1
vibrio Image

Vibrio

Total strains: 27,366

Assemblies in progress: 318

Schemes: rMLST, Vibrio cgMLST + HierCC
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Helicobacter

Total strains: 18,652

Assemblies in progress: 0

Schemes: rMLST
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Yersinia

Total strains: 13,727

Assemblies in progress: 8

Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1
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Moraxella

Total strains: 2,996

Assemblies in progress: 0

Schemes: rMLST, Achtman 7 Gene